Has it given you the correct chain? You can always check https://www.geocerts.com/ssl-checker and see if DST Root CA X3 is still present. (You can also analyse the file directly and convert it to a readable cert using OpenSSL. Unfortunately because the two chains provided by LetsEncrypt are:
- DST Root CA X3 -> ISRG Root X1 -> R3 LetsEncrypt
- ISRG Root X1 -> R3 LetsEncrypt